Movement Analysis - Revision history

StefanS at 13:35, 2 March 2021

2021-03-02T13:35:54Z

StefanS: fixing Abode manual link after new uplaod

2021-03-01T21:38:54Z

fixing Abode manual link after new uplaod

StefanS: changes from uzh domain downloads to geosteiniger downloads (not for poster and abode manual)

2021-03-01T21:14:55Z

changes from uzh domain downloads to geosteiniger downloads (not for poster and abode manual)

StefanS: changed notes download link

2021-03-01T21:11:23Z

changed notes download link

StefanS at 20:03, 11 February 2021

2021-02-11T20:03:47Z

StefanS: /* Download */

2016-04-28T17:29:10Z

‎Download

StefanS at 17:28, 28 April 2016

2016-04-28T17:28:31Z

StefanS: /* Download */

2015-04-24T15:45:46Z

‎Download

StefanS: /* Download */

2015-04-24T15:45:15Z

‎Download

StefanS: /* Download */

2015-04-07T21:37:43Z

‎Download

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 We have create a toolbox for the free GIS software [http://www.openjump.org OpenJUMP] that allows to analyse movement data, called '''OpenJUMP HoRAE''' - '''Ho'''me '''R'''ange '''A'''nalysis and '''E'''stimation (pronounced: ''hooray''). The software is and can be freely distributed under the [http://www.gnu.org/licenses/gpl-2.0.txt General Public License verison 2.0 (GPL)] - so you can give it to your co-worker or even modify it.
 '''Update: 28. Apr. 2016''' - fixed bug that prevented correct execution of Asymptote Analysis HR method<br/>
@@ Line 35: / Line 33: @@
 * a short [http://horae.geosteiniger.cl/downloads/oj_horae_sstein_v1_wiki.pdf article (pdf)] that describes the functions of the toolbox (this is the 1st version; the final is here [http://onlinelibrary.wiley.com/doi/10.1002/wsb.168/abstract Wildlife Society Bulletin])
-Some preliminary results for a comparison of the estimators with grizzly bear data: [http://horae.geosteiniger.cl/downloads/sstein_gb_homerange_estimation_final.pdf GIScience 2010 extended abstract (pdf)] and [http://www.geo.uzh.ch/~sstein/manuscripts/sstein_giscience2010_hre_eval_v2_pdfscreenprint_lowres.pdf poster (pdf)].
+Some preliminary results for a comparison of the estimators with grizzly bear data: [http://horae.geosteiniger.cl/downloads/sstein_gb_homerange_estimation_final.pdf GIScience 2010 extended abstract (pdf)]. (The link to the [http://www.geo.uzh.ch/~sstein/manuscripts/sstein_giscience2010_hre_eval_v2_pdfscreenprint_lowres.pdf poster (pdf)] seems to be dead).
 A test dataset with 14 GPS points to check out the functions of the toolbox is shipped with the distribution and can be found in the folder "''/testdata/''".

@@ Line 44: / Line 44: @@
 A revised version of the user manual for OpenJUMP HoRAE is available since Feb 2013 ( [http://horae.geosteiniger.cl/downloads/horae_documentation_v1.2final.pdf download pdf]). It is also included in the software distribution. ('''Important''': In the 2011 Version was an error in the core area calculation description; but not in the calculation.)
-The manual describes only use of the software. For more background information on the methods we recommend to have a look at the [http://www.geo.uzh.ch/~sstein/ojhorae/laver_abode_user_manual_2005.pdf ABODE manual] since most functions implemented were "inspired" by the ABODE toolbox (but software calculations are differently).
+The manual describes only use of the software. For more background information on the methods we recommend to have a look at the [http://horae.geosteiniger.cl/downloads/laver_abode_user_manual_2005.pdf ABODE manual] since most functions implemented were "inspired" by the ABODE toolbox (but software calculations are differently).
 We have also created a wiki page describing [[Problems with the HoRAE Toolbox]]. We had a start with a wiki for the manual, [[Home Range Calculation Manual]], but it needs to be revised.

@@ Line 31: / Line 31: @@
 The software should run on '''Windows''' and '''Linux''' systems. MacOSX users can use the same version.
 * [http://sourceforge.net/projects/jump-pilot/files/OpenJUMP_plugins/More%20Plugins/OpenJUMP%20HORAE/OpenJUMP-171Plus_HORAE_apr2016.zip/download download software] - version from Apr. 2016 ca. 48 MB including documentation - this version is packaged with OpenJUMP 1.7.1 instead of 1.6 as for the March 2013 version; (Note, a backup copy on another server can be downloaded from [http://146.155.17.19/ojhorae/openjump171plus_moveantools_oct2014.zip here])
-*: older well-tested versions are still available: [http://www.geo.uzh.ch/~sstein/ojhorae/openjump_rc16moveantools_mar2013.zip HoraeMar2013] [http://www.geo.uzh.ch/~sstein/ojhorae/openjump143moveantools_nov2011.zip HoraeNov2011]
+*: older well-tested versions are still available: [http://horae.geosteiniger.cl/downloads/openjump_rc16moveantools_mar2013.zip HoraeMar2013] [http://horae.geosteiniger.cl/downloads/openjump143moveantools_nov2011.zip HoraeNov2011]
 * [http://horae.geosteiniger.cl/downloads/notes.txt install instructions] -  note, the software requires [http://www.oracle.com/technetwork/java/javase/downloads/index.html Java Runtime Environment (JRE)] installed
-* a short [http://www.geo.uzh.ch/~sstein/ojhorae/oj_horae_sstein_v1_wiki.pdf article (pdf)] that describes the functions of the toolbox (this is the 1st version; the final is here [http://onlinelibrary.wiley.com/doi/10.1002/wsb.168/abstract Wildlife Society Bulletin])
+* a short [http://horae.geosteiniger.cl/downloads/oj_horae_sstein_v1_wiki.pdf article (pdf)] that describes the functions of the toolbox (this is the 1st version; the final is here [http://onlinelibrary.wiley.com/doi/10.1002/wsb.168/abstract Wildlife Society Bulletin])
-Some preliminary results for a comparison of the estimators with grizzly bear data: [http://www.geo.uzh.ch/~sstein/manuscripts/sstein_gb_homerange_estimation_final.pdf GIScience 2010 extended abstract (pdf)] and [http://www.geo.uzh.ch/~sstein/manuscripts/sstein_giscience2010_hre_eval_v2_pdfscreenprint_lowres.pdf poster (pdf)].
+Some preliminary results for a comparison of the estimators with grizzly bear data: [http://horae.geosteiniger.cl/downloads/sstein_gb_homerange_estimation_final.pdf GIScience 2010 extended abstract (pdf)] and [http://www.geo.uzh.ch/~sstein/manuscripts/sstein_giscience2010_hre_eval_v2_pdfscreenprint_lowres.pdf poster (pdf)].
 A test dataset with 14 GPS points to check out the functions of the toolbox is shipped with the distribution and can be found in the folder "''/testdata/''".
@@ Line 42: / Line 42: @@
 == Documentation ==
-A revised version of the user manual for OpenJUMP HoRAE is available since Feb 2013 ( [http://www.geo.uzh.ch/~sstein/ojhorae/horae_documentation_v1.2final.pdf download pdf]). It is also included in the software distribution. ('''Important''': In the 2011 Version was an error in the core area calculation description; but not in the calculation.)
+A revised version of the user manual for OpenJUMP HoRAE is available since Feb 2013 ( [http://horae.geosteiniger.cl/downloads/horae_documentation_v1.2final.pdf download pdf]). It is also included in the software distribution. ('''Important''': In the 2011 Version was an error in the core area calculation description; but not in the calculation.)
 The manual describes only use of the software. For more background information on the methods we recommend to have a look at the [http://www.geo.uzh.ch/~sstein/ojhorae/laver_abode_user_manual_2005.pdf ABODE manual] since most functions implemented were "inspired" by the ABODE toolbox (but software calculations are differently).
@@ Line 49: / Line 49: @@
 Other documents describing new methods implemented:
-* Steiniger, S. (2009, unpublished): ''A vector-based algorithm to detect core, edge, patch and corridor areas and comparison with its raster-based complement.'' [http://www.geo.uzh.ch/~sstein/ojhorae/rastervector_lepattern_sstein_v2_forGBpaper.pdf (pdf)] --- The document explains the different types of classes such as core, edge, patch and corridor that can be derived with the function <code>MOVEAN>HRE Analysis>Extract Core, Patch, Edge</code>; and: <code>MOVEAN>HRE Analysis>Extract Corridors</code>.
+* Steiniger, S. (2009, unpublished): ''A vector-based algorithm to detect core, edge, patch and corridor areas and comparison with its raster-based complement.'' [http://horae.geosteiniger.cl/downloads/rastervector_lepattern_sstein_v2_forGBpaper.pdf (pdf)] --- The document explains the different types of classes such as core, edge, patch and corridor that can be derived with the function <code>MOVEAN>HRE Analysis>Extract Core, Patch, Edge</code>; and: <code>MOVEAN>HRE Analysis>Extract Corridors</code>.
-* Steiniger, S., Hunter, A.J.S. (2013): A scaled line-based kernel density estimator for the retrieval of utilization distributions and home ranges from GPS movement tracks. ''Ecological Informatics'' 13:1-8 ([http://dx.doi.org/10.1016/j.ecoinf.2012.10.002 Elsevier link], [http://www.geo.uzh.ch/~sstein/ojhorae/linekde_sstein_forweb.pdf manuscript pdf]) --- The document explains how the line-based Kernel Density Estimator (Line-KDE) works and compares it with Point-based KDE and the Brownian Bridge (BB) estimator. The function is to be found under <code>MOVEAN>HRE>Line KD>...</code>.
+* Steiniger, S., Hunter, A.J.S. (2013): A scaled line-based kernel density estimator for the retrieval of utilization distributions and home ranges from GPS movement tracks. ''Ecological Informatics'' 13:1-8 ([http://dx.doi.org/10.1016/j.ecoinf.2012.10.002 Elsevier link], [http://horae.geosteiniger.cl/downloads/linekde_sstein_forweb.pdf manuscript pdf]) --- The document explains how the line-based Kernel Density Estimator (Line-KDE) works and compares it with Point-based KDE and the Brownian Bridge (BB) estimator. The function is to be found under <code>MOVEAN>HRE>Line KD>...</code>.
 If you want to '''cite/reference''' OpenJUMP HoRAE, then we ask you to use our 2012 article in the Wildlife Society Bulletin (see also above, [http://onlinelibrary.wiley.com/doi/10.1002/wsb.168/abstract WSB link]).

@@ Line 32: / Line 32: @@
 * [http://sourceforge.net/projects/jump-pilot/files/OpenJUMP_plugins/More%20Plugins/OpenJUMP%20HORAE/OpenJUMP-171Plus_HORAE_apr2016.zip/download download software] - version from Apr. 2016 ca. 48 MB including documentation - this version is packaged with OpenJUMP 1.7.1 instead of 1.6 as for the March 2013 version; (Note, a backup copy on another server can be downloaded from [http://146.155.17.19/ojhorae/openjump171plus_moveantools_oct2014.zip here])
 *: older well-tested versions are still available: [http://www.geo.uzh.ch/~sstein/ojhorae/openjump_rc16moveantools_mar2013.zip HoraeMar2013] [http://www.geo.uzh.ch/~sstein/ojhorae/openjump143moveantools_nov2011.zip HoraeNov2011]
-* [http://www.geo.uzh.ch/~sstein/ojhorae/notes.txt install instructions] -  note, the software requires [http://www.oracle.com/technetwork/java/javase/downloads/index.html Java Runtime Environment (JRE)] installed
+* [http://horae.geosteiniger.cl/downloads/notes.txt install instructions] -  note, the software requires [http://www.oracle.com/technetwork/java/javase/downloads/index.html Java Runtime Environment (JRE)] installed
 * a short [http://www.geo.uzh.ch/~sstein/ojhorae/oj_horae_sstein_v1_wiki.pdf article (pdf)] that describes the functions of the toolbox (this is the 1st version; the final is here [http://onlinelibrary.wiley.com/doi/10.1002/wsb.168/abstract Wildlife Society Bulletin])

@@ Line 1: / Line 1: @@
 We have create a toolbox for the free GIS software [http://www.openjump.org OpenJUMP] that allows to analyse movement data, called '''OpenJUMP HoRAE''' - '''Ho'''me '''R'''ange '''A'''nalysis and '''E'''stimation (pronounced: ''hooray''). The software is and can be freely distributed under the [http://www.gnu.org/licenses/gpl-2.0.txt General Public License verison 2.0 (GPL)] - so you can give it to your co-worker or even modify it.
 '''Update: 28. Apr. 2016''' - fixed bug that prevented correct execution of Asymptote Analysis HR method<br/>
 '''Update: 7. Mar. 2015''' - changed some download and document links, since our file hosting provider stopped offering private file download service.<br/>
-'''Update: 19. Nov. 2014''' - A version packaged with OpenJUMP 1.7.1 was released. No warranties though. Please report to sstein---geo.uzh.ch if you spot differences.<br/>
+'''Update: 19. Nov. 2014''' - A version packaged with OpenJUMP 1.7.1 was released. No warranties though. Please report to stefan---geosteiniger.cl if you spot differences.<br/>
 '''Update: 20. Feb. 2013''' - A new version has been released including a new CSV file reader, adding the GeoEllipse method by JA Long and TA Nelson (2012), and a function to extract time attributes from date fields.
@@ Line 63: / Line 65: @@
 Please note, that you need to login or subscribe first to send a message.
-However, you can contact me, Stefan Steiniger, writing an email to sstein(=at=)geo.uzh.ch. Alternatively you may contact [http://www.ucalgary.ca/~ahunter/ Andrew Hunter].
+However, you can contact me, Stefan Steiniger, writing an email to ssteiniger(=at=)uc.cl. Alternatively you may contact [http://www.ucalgary.ca/~ahunter/ Andrew Hunter].
 == Source Code & Future Development & Bug Reporting ==

@@ Line 27: / Line 27: @@
 == Download ==
 The software should run on '''Windows''' and '''Linux''' systems. MacOSX users can use the same version.
-* [http://www.geo.uzh.ch/~sstein/ojhorae/openjump171plus_moveantools_oct2014.zip download software] - version from Oct. 2014 ca. 49 MB including documentation - this version is packaged with OpenJUMP 1.7.1 instead of 1.6 as for the March 2013 version; (a backup copy on another server can be downloaded from [http://146.155.17.19/ojhorae/openjump171plus_moveantools_oct2014.zip here])
+* [http://www.geo.uzh.ch/~sstein/ojhorae/openjump171plus_moveantools_oct2014.zip download software] - version from Oct. 2014 ca. 49 MB including documentation - this version is packaged with OpenJUMP 1.7.1 instead of 1.6 as for the March 2013 version; (Note, a backup copy on another server can be downloaded from [http://146.155.17.19/ojhorae/openjump171plus_moveantools_oct2014.zip here])
 *: older well-tested versions are still available: [http://www.geo.uzh.ch/~sstein/ojhorae/openjump_rc16moveantools_mar2013.zip HoraeMar2013] [http://www.geo.uzh.ch/~sstein/ojhorae/openjump143moveantools_nov2011.zip HoraeNov2011]
 * [http://www.geo.uzh.ch/~sstein/ojhorae/notes.txt install instructions] -  note, the software requires [http://www.oracle.com/technetwork/java/javase/downloads/index.html Java Runtime Environment (JRE)] installed